Algorithms for Sequence Analysis Prof. Dr. Sven Rahmann Special Lecture MSc Bioinformatics, 4V+2Ü, 9 CP

News

17.05.2022

Tutorial

Since there is currently no internet available at the university, we will discuss the exercise next week.

09.05.2022

No recording, the lecture will be skipped

Dear all,

please disregard the previous email. Due to technical quality issues with recordings from my laptop, there is no lecture available from today. I will give the lecture on Thursday. I'm very sorry for these issues. Enjoy the free time!

 

09.05.2022

No live lecture today; recording available later

Dear all,

please note that there will be no live lecture this morning. A recording of the conclusion of Ukkonen's Algorithm for suffix tree construction will be available later today.

Thursday, we will have a regular lecture introducing suffix arrays and their... Read more

Dear all,

please note that there will be no live lecture this morning. A recording of the conclusion of Ukkonen's Algorithm for suffix tree construction will be available later today.

Thursday, we will have a regular lecture introducing suffix arrays and their properties and applications.

 

21.04.2022

Announcement - Women in Bioinformatics Talk Series

Note: The following online lecture series is open to women only! It is not organized by UdS!

Are you interested in a scientific career as a woman in bioinformatics? You have questions and worries regarding how to get there?

The online lecture series "Women in... Read more

Note: The following online lecture series is open to women only! It is not organized by UdS!

Are you interested in a scientific career as a woman in bioinformatics? You have questions and worries regarding how to get there?

The online lecture series "Women in Bioinformatics" provides the answers. Successful female scientists present their research, their career path and answer your questions.

Registration is now open for the talk by Prof. Dr. Alice McHardy on 14.6.2022, 14:00 – 15:30  (CEST) (rescheduled from 10.05.22). Prof. Dr. McHardy holds a diploma in biochemistry and a doctoral degree in bioinformatics, both from Bielefeld University in Germany. From 2005 to 2007 she first was a postdoc and then a permanent staff member in the Bioinformatics and Pattern Discovery Group at the IBM T.J. Watson Research Center in Yorktown Heights, USA. She then became the head of the independent research group for Computational Genomics and Epidemiology at the Max Planck Institute for Computer Science in Saarbrücken. In 2010, she was appointed Chair of Algorithmic Bioinformatics at Heinrich Heine University in Düsseldorf. In 2014, she became head of the Department of Computational Biology of Infection Research at the Helmholtz Centre for Infection Research in Braunschweig and was appointed as a full professor at TU Braunschweig.

Participation is free but registration is required for every talk. Details can be found at: https://www.bio.ifi.lmu.de/women-in-bioinformatics. Please note that the time of the lecture may vary.

For further updates on upcoming talks please register for our Newsletter (https://lists.lrz.de/mailman/listinfo/wbioinformatics) or follow us on Twitter (https://twitter.com/WBioinformatics).

17.04.2022

Tutorials

Dear all,
the registration for the tutorials is open now.
To use the github classroom you need a github account (it doesn't matter if it was created trough university mail or another one).

Tuesday and Wednesday I plan to briefly show you how github classroom... Read more

Dear all,
the registration for the tutorials is open now.
To use the github classroom you need a github account (it doesn't matter if it was created trough university mail or another one).

Tuesday and Wednesday I plan to briefly show you how github classroom works, the tasks are structured and how you can run the tests. If you don't have any experience with git yet, you can find a tutorial in the material section.

14.04.2022

Recordings and first assignment online!

Dear all,

after zoom took some time to process the recordings, the videos of today's lecture are online now (00: administrative business; 01: first lecture) and can be accessed from the Materials section. Assignment 01 is also online. Please 1) download and read... Read more

Dear all,

after zoom took some time to process the recordings, the videos of today's lecture are online now (00: administrative business; 01: first lecture) and can be accessed from the Materials section. Assignment 01 is also online. Please 1) download and read the PDF, and 2) access the link to github classroom, where you must accept the assignment. You will also need a github account. If you have any questions, please contact Jens Zentgraf (see Team).

Next week, we will look in detail at the average time analysis of the naive algorithm (and how to derive it), and will get to know a vastly faster algorithm. Note that Monday is a holiday, and there will be no lecture on Monday. Tutorials will start next week, and you will receive instructions on how to express your preferences. In case of any doubts about the situation, we suggest to go to the online tutorial first and maybe later switch to the on-campus tutorial.

Happy holidays!

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Algorithms for Sequence Analysis

(Special lecture 4V+2Ü, 9 CP for MSc Bioinformatics, open to other CS students as well!)

The lectures start on Thursday April 14, 2022. The last lecture is on July 21, 2022 (summary and review).

Lecture Dates:

  • Every Monday 08:30 - 10:00 (not on April 11!)
  • Every Thursday 08:30 - 10:00
  • except on official holidays (Easter Monday, Ascension Day, Whit Monday, Corpus Christi).

Tutorials (at least 2 tutorials, one of them may be online).

  • Every Tuesday (14:15 - 15:45 online (Zoom))
  • Every Wednesday (14:15 - 15:45 ZBI E2 1 room 001)

You need to be registered for this course in order to access the Materials section with the Zoom links.

 



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